if its a gaming server, then you need to have the host install the "orangebox" files..unless you wanna hand upload..but that wouldn't be fun at all.
Then upload the gesource files.
Then figure out how the host restarts/resets the server, and change the command line to something similar to this:
-game gesource_release -norestart -nocrashdialog +ip 206.123.95.198 -port 27015 -tickrate 66 +fps_max 600 +maxplayers 14 +exec server.cfg +map ge_facility -console
(of course with your ip/port)
(http://img141.imageshack.us/img141/4830/39146949.png)
Example of what it might look like ^^
Basicly follow steps 3-6 on the Wiki server page (http://wiki.goldeneyesource.net/index.php/Beta3_Server_Install)
Easiest way would be to get your server host do it, if there nice :)